Ah my backyard
You must be from the NY area. With the exception of Gabreski, I've flown from Republic to every airport on that area of the sectional, several times IRL. Got my Tailwheel endorsement at Brookhaven. Learning VOR navigation and triangulation was fun when I was in flight school (before GPS). I never really cared for the NDB.
There will always be a residual core of VOR and ILS stations kept on to keep the system working in the event of a satnav outage. Big plane inertial reference systems are not precise enough with error increasing over time. It’s prudent to use all the navaids available in a plane, just to be sure.
I never flew in the U.S., used a SkyVector NYC chart in a search for convenient funny VORs. Here is a VOR listing example from the UK Airpilot. Look at how far out Jersey VOR had got before its update. The magnetic north pole movement has increased greatly so out of date VOR variation will become a bigger effect.
One way to get accurate sim VOR navigation is to look up the published VOR variation and compare it the local sim variation, presuming that the sim database is up to date. Another way is to plot a long track over the VOR north arrow in SkyVector and observe any difference from local magnetic north. Real world protractors are used over the VORs in paper charts. Estimating the plotted radial using the VOR compass rose in SkyVector is probably good enough. Published fixed routes work fine.